PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF111700070CFD_t1

Common Name

TRAES_3BF111700070CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 302aa MW: 33827.2 Da PI: 8.4072

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF111700070CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.7	2.8e-15	85	180	2	94
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 +k+l +sd +++gr+vlpkk e++ ++ ++ l++ d ++ + W++k++y ++ks++yvl+ ++ ++v+ ++L++gDf+ TRAES3BF111700070CFD_t1 85 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFI 167 79999********************653..445678*8888*****8999999999.*************** PP EEEE-SSSEE..EE CS B3 81 vFkldgrsefelvv 94 +++ d++ + ++v+ TRAES3BF111700070CFD_t1 168 MIYKDDD-KNRFVI 180 *5554.433344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.46E-18	83	181	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-22	83	185	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.56E-22	83	184	No hit	No description
PROSITE profile	PS50863	9.291	84	186	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-11	84	186	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-11	85	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAAISSSSSS SKRRSPSAST TSSSSGDGIG EYRPQLVTRK RRSGGRGPRG GVRWMPAIRP 60 VNELDLNRVA LDPNHQVAGL RVILQKELRN SDISQLGRIV LPKKESEAYL PILTSKDGRS 120 LRMHDLLNAQ LWTFKYRYWP NNKSRMYVLE NTGDYVRTHN LRVGDFIMIY KDDDKNRFVI 180 RAKKAGDDLV ASLPQFHEHI SSILPIPEVD DYVSLIPPPA DISAFVPQAD ENYEMFDGIF 240 NSLPEIPVAN VRYSDFFDPF SDCMDMSNPG LNANNSANLG SHFHDERTGL SLFPNPTSGP 300 LM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	42	TRKRRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375142	0.0	AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014754315.1	1e-151	PREDICTED: B3 domain-containing protein LFL1-like
Swissprot	A4LBC0	1e-125	LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBL	A0A077S2P9	0.0	A0A077S2P9_WHEAT; Uncharacterized protein
STRING	MLOC_15725.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8091	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	2e-42	B3 family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]